MMseqs2: ultra fast and sensitive search and clustering suite
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Updated
Dec 4, 2024 - C
MMseqs2: ultra fast and sensitive search and clustering suite
Versatile open-source tool for microbiome analysis
Ultra-fast and memory-efficient (meta-)genome assembler
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Accurate sample inference from amplicon data with single nucleotide resolution
An analysis and visualization platform for 'omics data
A complete pipeline for metagenomic analysis
ATLAS - Three commands to start analyzing your metagenome data
A collection of Galaxy-related training material
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Rapid comparison and dereplication of genomes
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Assembly and binning of metagenomes
Genomic Data Retrieval with R
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
Amplicon sequencing analysis workflow using DADA2 and QIIME2
🚀 A sequencing simulator
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